Installation

Clone the repository

git clone https://github.com/angelolab/Nimbus-Inference

Make a conda environment for Nimbus and activate it

conda create -n Nimbus python==3.10
conda activate Nimbus

Install CUDA libraries if you have a NVIDIA GPU available

conda install -c conda-forge cudatoolkit=11.8 cudnn=8.2.0

Install the package and all depedencies in the conda environment

python -m pip install -e Nimbus-Inference

Navigate to the example notebooks and start jupyter

cd Nimbus-Inference/templates

jupyter notebook